Enrichm annotate
WebMar 12, 2024 · active environment : enrichm active env location : … WebJun 27, 2024 · enrichm annotate --genome_directory all_cat/ --ko --threads 40 --output 1 …
Enrichm annotate
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WebHi! I've been trying to use this tool to annotate a prodigal output, and get the % of kegg module completeness. Running this: enrichm annotate --protein_directory Samples --ko --threads 2 --for... WebJan 16, 2024 · Annotation of the 2305 proteins this MAG encoded revealed all subunits of the MCR complex arranged in operons (mcrABG), including two copies of the mcrC subunit and an ancillary mcrD subunit, all ...
WebI guess this is caused by there being a ~ character in some gene name, as well as separating the genome from the gene name? enrichm annotate --genome_directory dereplicated_representatives_fasta/ -... WebGenomes were annotated using EnrichM annotate (github. com/geronimp/enrichM). Briefly, EnrichM calls proteins from contigs using Prodigal v2.6.3 [37], and blasts them against UniRef100 using DIAMOND [38] v0.9.22 to obtain KO annotations. Pfam-A [39] (release 32) and TIGRFAM [40] (release 15.0) Hidden Markov Models (HMMs) were …
WebPlease refer to enrichM, emapper, and InterProScan to have a more comprehensive … WebEnrichM is a set of comparative genomics tools for large sets of metagenome assembled …
WebJan 19, 2024 · EnrichM’s “annotate” function was also used to identify orthologous …
If you have any feedback about EnrichM, drop an email to the SupportM public help forum. Software by Joel A. Boyd(@geronimp) at the Australian Centre for Ecogenomics (ACE). See more I want EnrichM to be as useful as possible, so please feel free to leave feature requests and bug reports. See more how do i find my watchlist on imdb on my tvWebNov 27, 2024 · Found a funky bug in the nucleotide sequence output from enrichm annotate. Here's an example: >contig_112_pilon_1 >contig_112_pilon_2 K20155 >contig_112_pilon_3. As you can see, these are all the same sequence. Thanks, Rhys. The text was updated successfully, but these errors were encountered: how do i find my watch later list on youtubeWebJul 9, 2024 · enrichm annotate --genome_directory /my-directory --suffix fa --ko - … how much is smashburgerWebFeb 25, 2024 · To compare, investigate synteny, and cross-validate the EnrichM KO annotations, the 14 HQ Danish MAGs were uploaded to the MicroScope Microbial Genome Annotation & Analysis Platform . how do i find my watchWebApr 29, 2024 · enrichm annotate --genome_directory ~/genomes --pfam --tigrfam --threads 12 --parallel 4. Attached is the log annotate.log. Attached also is a genome file (Gave it a .log extension as Github wont allow me to upload a .fa file) Coassembly_metabat_645.fasta.log how much is smile fastWebFeb 8, 2024 · 1 enrichm annotate KO frequency table but all zeros #121 opened on Feb 5, 2024 by mhyleung 3 enrichm error #119 opened on Jan 31, 2024 by jianshu93 cannot open help pages/wiki #115 opened on Dec … how much is smiWebMar 30, 2024 · -bash-4.2$ enrichm annotate --genome_files reference.faa [2024-03-30 … how much is smilefast